Index

A

adiabatic (spectre.file_io.input_parameters.PhysicsParameters attribute) allocate() (surf_henneberg.SurfaceHenneberg method) allrzrz (spectre.file_io.input_parameters.PhysicsParameters attribute) allrzrz_from_interface_arrays() (in module spectre.core.helpers) alpha_fac (surf_henneberg.SurfaceHenneberg attribute) angular_force_jac_likespec() (in module spectre.angle_targets) angular_force_likespec() (in module spectre.angle_targets) angular_force_real() (in module spectre.angle_targets) angular_force_real_jac() (in module spectre.angle_targets) approx_derivative() (in module spectre.numdiff_scipy) arclength_poloidal_angle() (surf.Surface method) arctan() (in module spectre.least_squares.least_squares)

area() (surf_henneberg.SurfaceHenneberg method) arrays_fourier (in module spectre.file_io.input_parameters) arrays_of_length_mvol (in module spectre.file_io.input_parameters) arrays_of_length_mvol_plus (in module spectre.file_io.input_parameters) arrays_of_length_nvol (in module spectre.file_io.input_parameters) arrays_of_length_nvol_minus_1 (in module spectre.file_io.input_parameters) aspect_ratio() (surf.Surface method) at_volume_edge() (in module spectre.geometry) ate (spectre.field_tracer.Field_Tracer attribute) ato (spectre.field_tracer.Field_Tracer attribute) atol (spectre.field_tracer.Field_Tracer attribute) aze (spectre.field_tracer.Field_Tracer attribute) azo (spectre.field_tracer.Field_Tracer attribute)

B

b_max() (in module surf_henneberg) b_min() (in module surf_henneberg) batch_size (spectre.field_tracer.Field_Tracer attribute) bfield_flow_nonsing() (in module spectre.field)

bfield_flow_sing() (in module spectre.field) bnc (spectre.file_io.input_parameters.PhysicsParameters attribute) bns (spectre.file_io.input_parameters.PhysicsParameters attribute) build_quadratic_1d() (in module spectre.least_squares.common)

C

calc_hessian() (in module spectre.stability) call_minpack() (in module spectre.least_squares.least_squares) callback (spectre.force_minimizer.Force_Minimizer attribute) callback_default() (in module spectre.force_minimizer) cauchy() (in module spectre.least_squares.least_squares) change_resolution() (surf_rz.SurfaceRZFourier method) check_correct_fields_provided() (spectre.file_io.input_parameters.PhysicsParameters class method) check_derivative() (in module spectre.numdiff_scipy) check_equidistant() (in module spectre.fourier) check_fsa_vols() (in module spectre.utils) check_henneberg_res() (spectre.file_io.input_parameters.InputParameters class method) check_intersection_wrapper() (in module spectre.isect_tester) check_jac_sparsity() (in module spectre.least_squares.least_squares) check_termination() (in module spectre.least_squares.common) check_tolerance() (in module spectre.least_squares.least_squares)

check_x_scale() (in module spectre.least_squares.least_squares) CL_scaling_vector() (in module spectre.least_squares.common) comm (spectre.field_tracer.Field_Tracer attribute) (spectre.force_minimizer.Force_Minimizer attribute) compute_grad() (in module spectre.least_squares.common) compute_jac_scale() (in module spectre.least_squares.common) construct_loss_function() (in module spectre.least_squares.least_squares) copy() (spectre.input_dict.input_dict method) (surf_rz.SurfaceRZFourier method) create_runfile() (in module spectre.utils) create_spectreout() (spectre.core.core.SPECTRE method) cross_section() (surf.Surface method) cross_section_phi() (surf.Surface method) curpol (spectre.file_io.input_parameters.PhysicsParameters attribute) curtor (spectre.file_io.input_parameters.PhysicsParameters attribute)

D

d2aspect_ratio_by_dcoeff_dcoeff() (surf.Surface method) d2major_radius_by_dcoeff_dcoeff() (surf.Surface method) d2mean_cross_sectional_area_by_dcoeff_dcoeff() (surf.Surface method) d2minor_radius_by_dcoeff_dcoeff() (surf.Surface method) darea() (surf_rz.SurfaceRZFourier method) daspect_ratio_by_dcoeff() (surf.Surface method) deduced_range (surf.Surface property) derivative() (spectre.least_squares.common.MemoizeJac method)

diagnostics (spectre.file_io.input_parameters.InputParameters attribute) DiagnosticsParameters (class in spectre.file_io.input_parameters) divide_work_mpi() (in module spectre.error_checking) dmajor_radius_by_dcoeff() (surf.Surface method) dmean_cross_sectional_area_by_dcoeff() (surf.Surface method) dminor_radius_by_dcoeff() (surf.Surface method) dogbox() (in module spectre.least_squares.dogbox) dogleg_step() (in module spectre.least_squares.dogbox) dvolume() (surf_rz.SurfaceRZFourier method)

E

enable_spawn() (in module spectre.process_pool) enforce_stell_sym (spectre.file_io.input_parameters.PhysicsParameters attribute) EPS (in module spectre.least_squares.common) (in module spectre.least_squares.least_squares) epsilon (spectre.file_io.input_parameters.GlobalParameters attribute)

escale (spectre.file_io.input_parameters.GlobalParameters attribute) eval_spectral_width() (in module spectre.angle_targets) eval_spectral_width_jac() (in module spectre.angle_targets) evaluate_quadratic() (in module spectre.least_squares.common) extend_via_normal() (surf_rz.SurfaceRZFourier method)

F

f_init (spectre.force_minimizer.Force_Minimizer attribute) field_obj (spectre.force_minimizer.Force_Minimizer attribute) Field_Tracer (class in spectre.field_tracer) filter_stellsym (spectre.file_io.input_parameters.MinimizationParameters attribute) filter_stellsym_pts() (in module spectre.utils) find_active_constraints() (in module spectre.least_squares.common) find_axis() (in module spectre.fixed_point) (spectre.postprocess.main.SPECTREout method) find_intersection() (in module spectre.least_squares.dogbox) find_res_infaces() (in module spectre.utils) fixed_range() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) Force_Minimizer (class in spectre.force_minimizer) force_modes() (in module spectre.force_targets) force_modes_dforce() (in module spectre.force_targets) force_modes_dforce_with_grad() (in module spectre.force_targets) force_modes_jac() (in module spectre.force_targets) force_modes_jac_speclike() (in module spectre.force_targets)

force_modes_speclike() (in module spectre.force_targets) force_modes_targetmn() (in module spectre.force_targets) force_real() (in module spectre.force_targets) force_real_jac() (in module spectre.force_targets) FORTRAN_INPUTS (spectre.core.core.SPECTRE attribute) fourier_transform_scalar() (surf_rz.SurfaceRZFourier method) freal_len_obj() (in module spectre.force_targets) freal_obj() (in module spectre.force_targets) freeb_bnorm_tol (spectre.file_io.input_parameters.MinimizationParameters attribute) freeb_max_iter (spectre.file_io.input_parameters.MinimizationParameters attribute) freeb_mode (spectre.force_minimizer.Force_Minimizer attribute) from_deprecated_input_file() (spectre.core.core.SPECTRE class method) from_input_params() (spectre.core.core.SPECTRE class method) FROM_MINPACK_TO_COMMON (in module spectre.least_squares.least_squares) from_nphi_ntheta() (surf.Surface class method) from_RZFourier() (surf_henneberg.SurfaceHenneberg class method) from_spectre() (spectre.postprocess.main.SPECTREout class method) ftol (spectre.file_io.input_parameters.MinimizationParameters attribute) fun (spectre.least_squares.common.MemoizeJac attribute)

G

gamma (spectre.file_io.input_parameters.PhysicsParameters attribute) gamma() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) gamma_impl() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) gamma_lin() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) gamma_rz() (surf_rz.SurfaceRZFourier method) gammadash1() (surf_henneberg.SurfaceHenneberg method) gammadash1_impl() (surf_henneberg.SurfaceHenneberg method) gammadash2() (surf_henneberg.SurfaceHenneberg method) gammadash2_impl() (surf_henneberg.SurfaceHenneberg method) gbnbld (spectre.file_io.input_parameters.GlobalParameters attribute) gbntol (spectre.file_io.input_parameters.GlobalParameters attribute) gen_infaces() (in module spectre.mesh_gen) gen_mesh_calc_deriv2() (in module spectre.mesh_gen) gen_mesh_calc_rz() (in module spectre.mesh_gen) gen_mesh_external() (in module spectre.mesh_gen) gen_mesh_fft_rz() (in module spectre.mesh_gen) gen_mesh_set_remn() (in module spectre.mesh_gen) get_beltrami_errors() (in module spectre.error_checking) get_cheby_basis_single() (in module spectre.basis) get_cheby_basis_single_w2derivs() (in module spectre.basis) get_coord_deriv() (in module spectre.geometry) get_coord_deriv_helper() (in module spectre.geometry) get_coord_transform() (in module spectre.geometry) get_coord_transform_helper() (in module spectre.geometry) get_cyl_island_width() (in module spectre.cyl_island_width) get_dofs() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) get_fmn_force_mask() (in module spectre.utils) get_freal_fsa() (in module spectre.utils) get_freal_fsa_metric() (in module spectre.utils) get_fsa_wrapper() (in module spectre.utils) get_inface_func() (in module spectre.mesh_gen)

get_interface_geometry() (in module spectre.geometry) get_jacobian() (in module spectre.geometry) get_jacobian_helper_v2() (in module spectre.geometry) get_keys() (spectre.input_dict.input_dict method) get_nml() (surf_rz.SurfaceRZFourier method) get_phi_quadpoints() (surf.Surface static method) get_quadpoints() (surf.Surface static method) get_rc() (surf_rz.SurfaceRZFourier method) get_rhomn() (surf_henneberg.SurfaceHenneberg method) get_rs() (surf_rz.SurfaceRZFourier method) get_rz() (surf_rz.SurfaceRZFourier method) get_rz_drzdxin() (in module spectre.geometry) get_rz_dtheta() (surf_rz.SurfaceRZFourier method) get_spec_magfield() (in module spectre.cyl_island_width) get_spec_polynomial_basis() (in module spectre.cyl_island_width) get_spec_R_derivatives() (in module spectre.cyl_island_width) get_spec_regularisation_factor() (in module spectre.cyl_island_width) get_spec_rtarr() (in module spectre.cyl_island_width) get_spec_vecpot() (in module spectre.cyl_island_width) get_theta_chord_length() (in module spectre.angle_targets) get_theta_chord_length_jac() (in module spectre.angle_targets) get_theta_quadpoints() (surf.Surface static method) get_vec_pot() (in module spectre.utils) get_vec_pot_flat() (in module spectre.utils) get_xinit_specwrap() (in module spectre.utils) get_xmn() (in module spectre.utils) get_zc() (surf_rz.SurfaceRZFourier method) get_zernike_basis_single() (in module spectre.basis) get_zernike_basis_single_w2derivs() (in module spectre.basis) get_zs() (surf_rz.SurfaceRZFourier method) global_ (spectre.file_io.input_parameters.InputParameters attribute) GlobalParameters (class in spectre.file_io.input_parameters) group_columns() (in module spectre.numdiff_scipy) group_dense() (in module spectre.numdiff_scipy) gtol (spectre.file_io.input_parameters.MinimizationParameters attribute)

H

has_key() (spectre.input_dict.input_dict method) has_rocket_fft (in module spectre.fourier)

helicity (spectre.file_io.input_parameters.PhysicsParameters attribute) henneberg_dof() (in module spectre.interface_dof) huber() (in module spectre.least_squares.least_squares)

I

identity_dof() (in module spectre.interface_dof) igeometry (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) im (spectre.field_tracer.Field_Tracer attribute) IMPLEMENTED_LOSSES (in module spectre.least_squares.least_squares) impol (spectre.file_io.input_parameters.NumericParameters attribute) in_ (spectre.field_tracer.Field_Tracer attribute) in_bounds() (in module spectre.least_squares.common) inface_repr (spectre.file_io.input_parameters.MinimizationParameters attribute) infaces_flatten() (in module spectre.utils) infaces_unflatten() (in module spectre.utils) init_from_h5() (spectre.field_tracer.Field_Tracer class method) init_interfaces() (in module spectre.infaces) input_dict (class in spectre.input_dict)

input_parameters_from_dict() (in module spectre.file_io.toml_io) input_parameters_to_dict() (in module spectre.file_io.toml_io) InputParameters (class in spectre.file_io.input_parameters) interpolate_on_arclength_grid() (surf.Surface method) intersect_curve() (in module spectre.isect_tester) intersect_curve_self() (in module spectre.isect_tester) intersect_segment() (in module spectre.isect_tester) intersect_trust_region() (in module spectre.least_squares.common) intor (spectre.file_io.input_parameters.NumericParameters attribute) inventory() (spectre.postprocess.main.SPECTREout method) inverse_fourier_transform_scalar() (surf_rz.SurfaceRZFourier method) iota (spectre.file_io.input_parameters.PhysicsParameters attribute) isurf (spectre.file_io.input_parameters.PhysicsParameters attribute) iter_freeb (spectre.force_minimizer.Force_Minimizer attribute) ivolume (spectre.file_io.input_parameters.PhysicsParameters attribute)

J

jac (spectre.least_squares.common.MemoizeJac attribute)

jac_func (spectre.force_minimizer.Force_Minimizer attribute)

L

ladiabatic (spectre.file_io.input_parameters.PhysicsParameters attribute) lautoinitbn (spectre.file_io.input_parameters.NumericParameters attribute) lbdybnzero (spectre.file_io.input_parameters.PhysicsParameters attribute) lbnszero (spectre.file_io.input_parameters.PhysicsParameters attribute) lchangeangle (spectre.file_io.input_parameters.NumericParameters attribute) lcheck (spectre.file_io.input_parameters.DiagnosticsParameters attribute) lconstraint (spectre.file_io.input_parameters.PhysicsParameters attribute) least_squares() (in module spectre.least_squares.least_squares) left_multiplied_operator() (in module spectre.least_squares.common) left_multiply() (in module spectre.least_squares.common) len_cons_real() (in module spectre.angle_targets) len_cons_real_jac() (in module spectre.angle_targets) len_factor (spectre.file_io.input_parameters.MinimizationParameters attribute) lerrortype (spectre.file_io.input_parameters.DiagnosticsParameters attribute) lfreebound (spectre.file_io.input_parameters.PhysicsParameters attribute) lhevalues (spectre.file_io.input_parameters.DiagnosticsParameters attribute)

lhevectors (spectre.file_io.input_parameters.DiagnosticsParameters attribute) lhmatrix (spectre.file_io.input_parameters.DiagnosticsParameters attribute) linitialize (spectre.file_io.input_parameters.NumericParameters attribute) logger (in module spectre.core.core) lp (spectre.file_io.input_parameters.PhysicsParameters attribute) lq (spectre.file_io.input_parameters.PhysicsParameters attribute) lrad (spectre.file_io.input_parameters.PhysicsParameters attribute) lrad_arr (spectre.field_tracer.Field_Tracer attribute) lreflect (spectre.file_io.input_parameters.PhysicsParameters attribute) lregion() (in module spectre.force_targets) lrzaxis (spectre.file_io.input_parameters.NumericParameters attribute) lsmr_operator() (in module spectre.least_squares.dogbox) lsparse (spectre.file_io.input_parameters.NumericParameters attribute) lsvdiota (spectre.file_io.input_parameters.NumericParameters attribute) ltransform (spectre.file_io.input_parameters.DiagnosticsParameters attribute) lvcgrid (spectre.file_io.input_parameters.NumericParameters attribute) lzerovac (spectre.file_io.input_parameters.NumericParameters attribute)

M

major_radius() (surf.Surface method) make_rotating_ellipse() (surf_rz.SurfaceRZFourier method) make_strictly_feasible() (in module spectre.least_squares.common) make_theta_uniform_arclength() (surf.Surface method) max_nfev (spectre.file_io.input_parameters.MinimizationParameters attribute) max_niter (spectre.file_io.input_parameters.MinimizationParameters attribute) maybe_jit() (in module spectre.config) (in module spectre.postprocess.config) mean_cross_sectional_area() (surf.Surface method) MemoizeJac (class in spectre.least_squares.common) method (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.MinimizationParameters attribute) mfreeits (spectre.file_io.input_parameters.GlobalParameters attribute) min_params (spectre.force_minimizer.Force_Minimizer attribute) minimization (spectre.file_io.input_parameters.InputParameters attribute) MinimizationParameters (class in spectre.file_io.input_parameters) minimize() (spectre.force_minimizer.Force_Minimizer method) minimize_quadratic_1d() (in module spectre.least_squares.common) minor_radius() (surf.Surface method) mmax (spectre.file_io.input_parameters.MinimizationParameters attribute) (surf_henneberg.SurfaceHenneberg attribute) mmpol (in module spectre.file_io.input_parameters) mmrzrz (spectre.file_io.input_parameters.PhysicsParameters attribute) mnmax (in module spectre.file_io.input_parameters) mntor (in module spectre.file_io.input_parameters) mnvol (in module spectre.file_io.input_parameters) model_config (spectre.file_io.input_parameters.DiagnosticsParameters attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) module spectre spectre.angle_targets spectre.basis spectre.config spectre.converters spectre.core spectre.core.core spectre.core.helpers spectre.cyl_island_width spectre.error_checking spectre.field spectre.field_tracer spectre.file_io spectre.file_io.input_parameters spectre.file_io.specfile_to_toml spectre.file_io.toml_io spectre.fixed_point spectre.force_minimizer spectre.force_targets spectre.fourier spectre.geometry spectre.infaces spectre.input_dict spectre.interface_dof spectre.isect_tester spectre.kind_map spectre.least_squares spectre.least_squares.common spectre.least_squares.dogbox spectre.least_squares.least_squares spectre.least_squares.trf spectre.mesh_gen spectre.numdiff_scipy spectre.plotting spectre.postprocess spectre.postprocess.config spectre.postprocess.main spectre.process_pool spectre.py_mod_names spectre.runners spectre.stability spectre.utils surf surf_henneberg surf_rz

mpol (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) (surf_rz.SurfaceRZFourier attribute) mpol_rz (spectre.file_io.input_parameters.MinimizationParameters attribute) mu (spectre.file_io.input_parameters.PhysicsParameters attribute) mupfits (spectre.file_io.input_parameters.PhysicsParameters attribute) mupftol (spectre.file_io.input_parameters.PhysicsParameters attribute) mvol (spectre.field_tracer.Field_Tracer attribute)

N

name (spectre.force_minimizer.Force_Minimizer attribute) ndiscrete (spectre.file_io.input_parameters.NumericParameters attribute) nfp (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) (surf_henneberg.SurfaceHenneberg attribute) (surf_rz.SurfaceRZFourier attribute) ngrid (spectre.file_io.input_parameters.DiagnosticsParameters attribute) nmax (spectre.file_io.input_parameters.MinimizationParameters attribute) (surf_henneberg.SurfaceHenneberg attribute) nnrzrz (spectre.file_io.input_parameters.PhysicsParameters attribute) normal() (surf_henneberg.SurfaceHenneberg method) nppts (spectre.file_io.input_parameters.DiagnosticsParameters attribute) nptrj (spectre.file_io.input_parameters.DiagnosticsParameters attribute)

nquad (spectre.file_io.input_parameters.NumericParameters attribute) nt_dbb (spectre.file_io.input_parameters.MinimizationParameters attribute) ntor (spectre.file_io.input_parameters.PhysicsParameters attribute) (surf_rz.SurfaceRZFourier attribute) ntor_rz (spectre.file_io.input_parameters.MinimizationParameters attribute) ntoraxis (spectre.file_io.input_parameters.NumericParameters attribute) num_dofs() (surf_henneberg.SurfaceHenneberg method) num_modes (spectre.file_io.input_parameters.PhysicsParameters attribute) num_threads (spectre.field_tracer.Field_Tracer attribute) numeric (spectre.file_io.input_parameters.InputParameters attribute) NumericParameters (class in spectre.file_io.input_parameters) nvol (spectre.file_io.input_parameters.PhysicsParameters attribute) nz_dbb (spectre.file_io.input_parameters.MinimizationParameters attribute)

O

obj_func (spectre.force_minimizer.Force_Minimizer attribute) objective (spectre.file_io.input_parameters.MinimizationParameters attribute) odetol (spectre.file_io.input_parameters.DiagnosticsParameters attribute) oita (spectre.file_io.input_parameters.PhysicsParameters attribute)

on_segment() (in module spectre.isect_tester) opsilon (spectre.file_io.input_parameters.GlobalParameters attribute) optimizer (spectre.force_minimizer.Force_Minimizer attribute) optimizer_default() (in module spectre.force_minimizer)

P

pack_interfaces() (in module spectre.utils) pad_fourier_arrays() (spectre.file_io.input_parameters.PhysicsParameters method) pad_fourier_arrays_input() (spectre.file_io.input_parameters.PhysicsParameters method) pad_nptrj() (spectre.file_io.input_parameters.DiagnosticsParameters method) pad_radial_float_arrays_mnvol() (spectre.file_io.input_parameters.PhysicsParameters method) pad_radial_float_arrays_mnvolplus() (spectre.file_io.input_parameters.PhysicsParameters method) pad_radial_int_arrays() (spectre.file_io.input_parameters.PhysicsParameters method) pad_toroidal_arrays() (spectre.file_io.input_parameters.PhysicsParameters method) parameters (spectre.core.core.SPECTRE property) pcondense (spectre.file_io.input_parameters.GlobalParameters attribute) periodic_integrator_thzt() (in module spectre.utils) pflux (spectre.file_io.input_parameters.PhysicsParameters attribute) phiedge (spectre.file_io.input_parameters.PhysicsParameters attribute) physics (spectre.file_io.input_parameters.InputParameters attribute) PhysicsParameters (class in spectre.file_io.input_parameters) pl (spectre.file_io.input_parameters.PhysicsParameters attribute) plot() (spectre.field_tracer.Field_Tracer method) (surf.Surface method) plot_field_mod() (spectre.postprocess.main.SPECTREout method) plot_fmn() (in module spectre.plotting) plot_fmn_anim() (in module spectre.plotting)

plot_grid() (in module spectre.plotting) plot_infaces() (in module spectre.plotting) (spectre.postprocess.main.SPECTREout method) plot_infaces3D() (spectre.postprocess.main.SPECTREout method) plot_infaces_helper() (in module spectre.plotting) plot_iota() (spectre.field_tracer.Field_Tracer method) (spectre.postprocess.main.SPECTREout method) plot_jacobian() (in module spectre.plotting) (spectre.postprocess.main.SPECTREout method) plot_poincare() (spectre.postprocess.main.SPECTREout method) plot_pressure() (spectre.postprocess.main.SPECTREout method) plot_spectrum() (surf_rz.SurfaceRZFourier method) plot_true_mesh() (in module spectre.plotting) postprocess() (spectre.force_minimizer.Force_Minimizer method) ppts (spectre.file_io.input_parameters.DiagnosticsParameters attribute) pr (spectre.file_io.input_parameters.PhysicsParameters attribute) prepare_bounds() (in module spectre.least_squares.least_squares) pressure (spectre.file_io.input_parameters.PhysicsParameters attribute) print_all_errors() (in module spectre.error_checking) print_inputs() (spectre.core.core.SPECTRE method) pscale (spectre.file_io.input_parameters.PhysicsParameters attribute) PYTHON_INPUTS (spectre.core.core.SPECTRE attribute)

Q

ql (spectre.file_io.input_parameters.PhysicsParameters attribute) qr (spectre.file_io.input_parameters.PhysicsParameters attribute) quadpoints_phi (surf_henneberg.SurfaceHenneberg attribute) (surf_rz.SurfaceRZFourier attribute)

quadpoints_theta (surf_henneberg.SurfaceHenneberg attribute) (surf_rz.SurfaceRZFourier attribute)

R

rac (spectre.file_io.input_parameters.PhysicsParameters attribute) RANGE_FIELD_PERIOD (surf.Surface attribute) RANGE_FULL_TORUS (surf.Surface attribute) RANGE_HALF_PERIOD (surf.Surface attribute) rank (spectre.force_minimizer.Force_Minimizer attribute) ras (spectre.file_io.input_parameters.PhysicsParameters attribute) rbc (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) rbs (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) rc (surf_rz.SurfaceRZFourier attribute) rcond_lstsq (spectre.file_io.input_parameters.MinimizationParameters attribute) read_input_parameters_from_toml() (in module spectre.file_io.toml_io) reduced_rzmn_dof() (in module spectre.interface_dof) reflective_transformation() (in module spectre.least_squares.common) regularized_lsq_operator() (in module spectre.least_squares.common) remove_file() (in module spectre.utils) reshape_fjac() (in module spectre.utils) reshape_modes_fjac() (in module spectre.utils)

resume (spectre.file_io.input_parameters.MinimizationParameters attribute) right_multiplied_operator() (in module spectre.least_squares.common) right_multiply() (in module spectre.least_squares.common) rp (spectre.file_io.input_parameters.PhysicsParameters attribute) rpol (spectre.file_io.input_parameters.PhysicsParameters attribute) rq (spectre.file_io.input_parameters.PhysicsParameters attribute) rtol (spectre.field_tracer.Field_Tracer attribute) rtor (spectre.file_io.input_parameters.PhysicsParameters attribute) run() (spectre.core.core.SPECTRE method) run_decorator (in module spectre.config) (in module spectre.postprocess.config) run_decorator_fft (in module spectre.fourier) run_local() (in module spectre.runners) run_pool() (in module spectre.process_pool) run_repeat_func() (spectre.force_minimizer.Force_Minimizer method) run_slurm() (in module spectre.runners) run_with_numba (in module spectre.config) (in module spectre.postprocess.config) rwc (spectre.file_io.input_parameters.PhysicsParameters attribute) rws (spectre.file_io.input_parameters.PhysicsParameters attribute)

S

save_errors_to_h5() (in module spectre.utils) save_h5() (spectre.field_tracer.Field_Tracer method) save_json() (spectre.input_dict.input_dict method) save_pickle() (spectre.input_dict.input_dict method) save_xin_fixb (spectre.file_io.input_parameters.MinimizationParameters attribute) scale_for_robust_loss_function() (in module spectre.least_squares.common) ScreenParameters (class in spectre.file_io.input_parameters) select_step() (in module spectre.least_squares.trf) serialize_fourier_arrays() (spectre.file_io.input_parameters.PhysicsParameters method) serialize_guess() (spectre.file_io.input_parameters.PhysicsParameters method) serialize_nptrj() (spectre.file_io.input_parameters.DiagnosticsParameters method) serialize_radial_arrays_mvol() (spectre.file_io.input_parameters.PhysicsParameters method) serialize_radial_arrays_mvol_plus() (spectre.file_io.input_parameters.PhysicsParameters method) serialize_radial_arrays_nvol() (spectre.file_io.input_parameters.PhysicsParameters method) serialize_radial_arrays_nvol_minus_1() (spectre.file_io.input_parameters.PhysicsParameters method) serialize_toroidal_arrays() (spectre.file_io.input_parameters.PhysicsParameters method) set_dofs() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) set_dofs_impl() (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) set_guess() (spectre.file_io.input_parameters.PhysicsParameters class method) set_if_none() (spectre.input_dict.input_dict method) set_rc() (surf_rz.SurfaceRZFourier method) set_rhomn() (surf_henneberg.SurfaceHenneberg method) set_rs() (surf_rz.SurfaceRZFourier method) set_zc() (surf_rz.SurfaceRZFourier method) set_zs() (surf_rz.SurfaceRZFourier method) shift_fftfreq() (in module spectre.fourier) soft_l1() (in module spectre.least_squares.least_squares) solve_lsq_trust_region() (in module spectre.least_squares.common) solve_trust_region_2d() (in module spectre.least_squares.common) spec_fft() (in module spectre.fourier) spec_fft_fast() (in module spectre.fourier) specfile_to_toml() (in module spectre.file_io.specfile_to_toml) spectre module SPECTRE (class in spectre.core.core) spectre.angle_targets module spectre.basis module spectre.config module spectre.converters module spectre.core module spectre.core.core module spectre.core.helpers module spectre.cyl_island_width module spectre.error_checking module spectre.field module spectre.field_tracer module spectre.file_io module spectre.file_io.input_parameters module spectre.file_io.specfile_to_toml module spectre.file_io.toml_io module spectre.fixed_point module

spectre.force_minimizer module spectre.force_targets module spectre.fourier module spectre.geometry module spectre.infaces module spectre.input_dict module spectre.interface_dof module spectre.isect_tester module spectre.kind_map module spectre.least_squares module spectre.least_squares.common module spectre.least_squares.dogbox module spectre.least_squares.least_squares module spectre.least_squares.trf module spectre.mesh_gen module spectre.numdiff_scipy module spectre.plotting module spectre.postprocess module spectre.postprocess.config module spectre.postprocess.main module spectre.process_pool module spectre.py_mod_names module spectre.runners module spectre.stability module spectre.utils module SPECTREout (class in spectre.postprocess.main) state (in module spectre.least_squares.dogbox) (in module spectre.least_squares.trf) stellsym (surf_henneberg.SurfaceHenneberg attribute) (surf_rz.SurfaceRZFourier attribute) step_size_to_bound() (in module spectre.least_squares.common) sth_to_RZ() (in module spectre.geometry) surf module surf_henneberg module surf_rz module Surface (class in surf) SurfaceHenneberg (class in surf_henneberg) SurfaceRZFourier (class in surf_rz) surfaces_from_spectre_xmn() (surf_henneberg.SurfaceHenneberg class method) surfaces_to_spectre_dxmn_dxdof() (surf_henneberg.SurfaceHenneberg class method) surfaces_to_spectre_xmn() (surf_henneberg.SurfaceHenneberg class method)

T

TERMINATION_MESSAGES (in module spectre.least_squares.least_squares) tflux (spectre.file_io.input_parameters.PhysicsParameters attribute) Timer (class in spectre.utils) to_RZFourier() (surf.Surface method) (surf_henneberg.SurfaceHenneberg method) (surf_rz.SurfaceRZFourier method) trace_field() (spectre.field_tracer.Field_Tracer method)

trace_field_single() (spectre.field_tracer.Field_Tracer method) trace_fieldlines() (spectre.postprocess.main.SPECTREout method) trace_one_fieldline() (spectre.postprocess.main.SPECTREout method) tracer (spectre.postprocess.main.SPECTREout property) trf() (in module spectre.least_squares.trf) trf_bounds() (in module spectre.least_squares.trf) trf_no_bounds() (in module spectre.least_squares.trf) triplet_orientation() (in module spectre.isect_tester)

U

unpack_interfaces() (in module spectre.utils) update_bnorm() (in module spectre.utils)

update_tr_radius() (in module spectre.least_squares.common) upsilon (spectre.file_io.input_parameters.GlobalParameters attribute)

V

validate_parameters() (spectre.file_io.input_parameters.InputParameters method) vcasingeps (spectre.file_io.input_parameters.GlobalParameters attribute) vcasingits (spectre.file_io.input_parameters.GlobalParameters attribute) vcasingper (spectre.file_io.input_parameters.GlobalParameters attribute) vcasingtol (spectre.file_io.input_parameters.GlobalParameters attribute)

vcnt (spectre.file_io.input_parameters.GlobalParameters attribute) vcnz (spectre.file_io.input_parameters.GlobalParameters attribute) vmec2spectre() (in module spectre.converters) vnc (spectre.file_io.input_parameters.PhysicsParameters attribute) vns (spectre.file_io.input_parameters.PhysicsParameters attribute) volume() (surf_henneberg.SurfaceHenneberg method)

W

wbasefn (spectre.file_io.input_parameters.ScreenParameters attribute) wbnorml (spectre.file_io.input_parameters.ScreenParameters attribute) wbroadcast_profile_data (spectre.file_io.input_parameters.ScreenParameters attribute) wbuild_vector_potential (spectre.file_io.input_parameters.ScreenParameters attribute) wcasing (spectre.file_io.input_parameters.ScreenParameters attribute) wcompute_beltrami_error (spectre.file_io.input_parameters.ScreenParameters attribute) wcompute_coordinates (spectre.file_io.input_parameters.ScreenParameters attribute) wcompute_metric_quantities (spectre.file_io.input_parameters.ScreenParameters attribute) wcompute_plasma_current (spectre.file_io.input_parameters.ScreenParameters attribute) wcompute_rotational_transform (spectre.file_io.input_parameters.ScreenParameters attribute) wconstruct_beltrami_field (spectre.file_io.input_parameters.ScreenParameters attribute) wconstruct_poincare_plot (spectre.file_io.input_parameters.ScreenParameters attribute) wd1mach (spectre.file_io.input_parameters.ScreenParameters attribute) wdcuhre (spectre.file_io.input_parameters.ScreenParameters attribute) wdf0ab (spectre.file_io.input_parameters.ScreenParameters attribute) wdforce (spectre.file_io.input_parameters.ScreenParameters attribute) wdfp100 (spectre.file_io.input_parameters.ScreenParameters attribute) wdfp200 (spectre.file_io.input_parameters.ScreenParameters attribute) wget_position_vetor_x (spectre.file_io.input_parameters.ScreenParameters attribute) wglobal (spectre.file_io.input_parameters.ScreenParameters attribute) whesian (spectre.file_io.input_parameters.ScreenParameters attribute) wi1mach (spectre.file_io.input_parameters.ScreenParameters attribute) wilut (spectre.file_io.input_parameters.ScreenParameters attribute) winitialize_internal_arrays (spectre.file_io.input_parameters.ScreenParameters attribute) wintghs (spectre.file_io.input_parameters.ScreenParameters attribute) wiqpack (spectre.file_io.input_parameters.ScreenParameters attribute) witers (spectre.file_io.input_parameters.ScreenParameters attribute)

wlbpol (spectre.file_io.input_parameters.ScreenParameters attribute) wlforce (spectre.file_io.input_parameters.ScreenParameters attribute) wmacros (spectre.file_io.input_parameters.ScreenParameters attribute) wmanual (spectre.file_io.input_parameters.ScreenParameters attribute) wmatrix (spectre.file_io.input_parameters.ScreenParameters attribute) wmemory (spectre.file_io.input_parameters.ScreenParameters attribute) wminpack (spectre.file_io.input_parameters.ScreenParameters attribute) wmtrxhs (spectre.file_io.input_parameters.ScreenParameters attribute) wnewton (spectre.file_io.input_parameters.ScreenParameters attribute) wnumrec (spectre.file_io.input_parameters.ScreenParameters attribute) wpackab (spectre.file_io.input_parameters.ScreenParameters attribute) wpackxi (spectre.file_io.input_parameters.ScreenParameters attribute) wpoloidal (spectre.file_io.input_parameters.GlobalParameters attribute) wpp00ab (spectre.file_io.input_parameters.ScreenParameters attribute) wreadin (spectre.file_io.input_parameters.ScreenParameters attribute) write_input_parameters_to_toml() (in module spectre.file_io.toml_io) write_nml() (surf_rz.SurfaceRZFourier method) wrksuite (spectre.file_io.input_parameters.ScreenParameters attribute) wrzaxis (spectre.file_io.input_parameters.ScreenParameters attribute) wsolve_beltrami_system (spectre.file_io.input_parameters.ScreenParameters attribute) wsphdf5 (spectre.file_io.input_parameters.ScreenParameters attribute) wspsint (spectre.file_io.input_parameters.ScreenParameters attribute) wvolume (spectre.file_io.input_parameters.ScreenParameters attribute) wvolume_integrate_chebyshev (spectre.file_io.input_parameters.ScreenParameters attribute) wwrite_vector_potentials (spectre.file_io.input_parameters.ScreenParameters attribute) wwrtend (spectre.file_io.input_parameters.ScreenParameters attribute) wxspech (spectre.file_io.input_parameters.ScreenParameters attribute)

X

x (spectre.least_squares.common.MemoizeJac attribute) x_curr (spectre.force_minimizer.Force_Minimizer attribute) x_init (spectre.force_minimizer.Force_Minimizer attribute)

xdof_to_xmn (spectre.force_minimizer.Force_Minimizer attribute) xmn_to_xdof (spectre.force_minimizer.Force_Minimizer attribute) xtol (spectre.file_io.input_parameters.MinimizationParameters attribute)

Z

zac (spectre.file_io.input_parameters.PhysicsParameters attribute) zas (spectre.file_io.input_parameters.PhysicsParameters attribute) zbc (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute)

zbs (spectre.field_tracer.Field_Tracer attribute) (spectre.file_io.input_parameters.PhysicsParameters attribute) zs (surf_rz.SurfaceRZFourier attribute) zwc (spectre.file_io.input_parameters.PhysicsParameters attribute) zws (spectre.file_io.input_parameters.PhysicsParameters attribute)